PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P00530_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 92aa    MW: 10087.5 Da    PI: 8.5592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P00530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-0820601555
                           HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           +i + +++L+ llP+ +   +  ++s ae+L+ A+++I+sLq
  GSMUA_Achr4P00530_001 20 QIADLLAKLQALLPEhR-IRSTDRVSAAEVLQDACNHIRSLQ 60
                           7999***********55.455566*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.626559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-71974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-52060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASRRSRSTQ ATSSRITDEQ IADLLAKLQA LLPEHRIRST DRVSAAEVLQ DACNHIRSLQ  60
REVDGLSGRL AQLLAMTDSS DAQAAVIRSL LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395121.17e-58PREDICTED: transcription factor ILI6-like
SwissprotA2Z7302e-31ILI7_ORYSI; Transcription factor ILI7
SwissprotQ338G62e-31ILI7_ORYSJ; Transcription factor ILI7
TrEMBLM0SJX08e-58M0SJX0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P00530_0012e-57(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-28bHLH family protein